Petter Ranefall NBIS affiliate

image analysis

email	petter.ranefall@it.uu.se
	https://orcid.org/0000-0002-6699-4015

Docent, Senior researcher/Resource person. Bioinformatician with focus on research support on image analysis.

Selected publications

Ranefall, P., Wester, K., Andersson, A.-C., Busch, C., and Bengtsson, E. (1998) Automatic quantification of immunohistochemically stained cell nuclei based on standard reference cells. Analytical Cellular Pathology , 17 , 111–23.

Ranefall, P., Wester, K., Busch, C., Malmstrom, P.-U., and Bengtsson, E. (1998) Automatic quantification of microvessels using unsupervised image analysis. Anal. Cell. Pathol. , 16 , 29–.

Ranefall, P., Egevad, L., Nordin, B., Busch, C., and Bengtsson, E. (1997) A new method for segmentation of colour images applied on immunohistochemically stained cells. Anal Cell Pathol , 15 , 145–.

Wester, K., Andersson, A. C., Ranefall, P., Bengtsson, E., Malmstrom, P. U., and Busch, C. (2000) Cultured human fibroblasts in agarose gel as a multi-functional controlfor immunohistochemistry. Standardization Of Ki67 (MIB1) assessment inroutinely processed urinary bladder carcinoma tissue. J Pathol , 190 , 503–.

Wester, K., Wahlund, E., Sundstrom, C., Ranefall, P., Bengtsson, E., Russell, P. J., Ow, K. T., Malmstrom, P. U., and Busch, C. (2000) Paraffin section storage and immunohistochemistry. Effects of time,temperature, fixation, and retrieval protocol with emphasis on p53 proteinand MIB1 antigen. Appl. Immunohistochem. , 8 , 61–.

Wester, K., Ranefall, P., Bengtsson, E., Busch, C., and Malmstrom, P. U. (1999) Automatic quantification of microvessel density in urinary bladdercarcinoma. Br J Cancer , 81 , 1363–.

Wester, K., Wahlund, E., Sundstrom, C., Ranefall, P., Bengtsson, E., Russell, P. J., Ow, K. T., Malmstrom, P. U., and Busch, C. (2000) Paraffin section storage and immunohistochemistry - Effects of time, temperature, fixation, and retrieval protocol with emphasis on p53 protein and MIB1 antigen. APPLIED IMMUNOHISTOCHEMISTRY & MOLECULAR MORPHOLOGY, 8 , 61–70.

Wester, K., Andersson, A. C., Ranefall, F., Bengtsson, E., Malmstrom, P. U., and Busch, C. (2000) Cultured human fibroblasts in agarose gel as a multi-functional control for immunohistochemistry. Standardization of Ki67 (MIBI) assessment in routinely processed urinary bladder carcinoma tissue. JOURNAL OF PATHOLOGY , 190 , 503–511.

Ranefall, P., Pacureanu, A., and Wählby, C. (2013) Viewing and analyzing slide scanner data using CellProfiler (work in progress). In, European BioImage Analysis Symposium 2013 :. Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA, USA, p. 58–.

Ranefall, P., Nordin, B., and Bengtsson, E. (1995) Finding Facial Features Using an HLS Colour Space. In, 8th International Conference on Image Analysis and Processing. Springer Verlag, pp. 191–196.

Ranefall, P. and Bengtsson, E. (1997) Automatic quantification of immunohistochemically stained cell nuclei using unsupervised image analysis. 58.

Thurfjell, L., Ranefall, P., and Bengtsson, E. (1998) A Deformable Atlas of the Chest Based on the Visible Man. Machine Graphics and Vision , 7 , 176–186.

Ranefall, P., Nordin, B., and Bengtsson, E. (1997) A New Method for Creating a Pixelwise Box classifier for Colour Images. Machine Graphics and Vision , 6 , 305–323.

Hellström, M., Ranefall, P., Wester, K., Brändstedt, S., and Busch, C. (1997) Effect of androgen deprivation on epithelial and mesenchymal tissue components in localized prostate cancer. British Journal of Urology , 79 , 421–426.

Ranefall, P., Egevad, L., Nordin, B., and Bengtsson, E. (1997) A new method for segmentation of colour images applied to immunohistochemically stained cell nuclei. Analytical Cellular Pathology , 15 , 145–156.

Ranefall, P., Wester, K., and Bengtsson, E. (1998) Automatic quantification of immunohistochemically stained cell nuclei using unsupervised image analysis. Analytical Cellular Pathology , 16 , 29–43.

Ranefall, P., Wester, K., Busch, C., Malmström, P.-U., and Bengtsson, E. (1998) Automatic quantification of microvessels using unsupervised image analysis. Analytical Cellular Pathology , 17 , 83–92.

Wester, K., Ranefall, P., Bengtsson, E., Busch, C., and Malmström, P.-U. (1999) Automatic quantification of microvessel density in urinary bladder carcinoma. British Journal of Cancer , 81 , 1363–1370.

Ranefall, P. (1998) Towards automatic quantification of immunohistochemistry using colour image analysis. 40.

Wester, K., Andersson, A.-C., Ranefall, P., Bengtsson, E., Malmström, P.-U., and Busch, C. (2000) Cultured human fibroblasts in agarose gel as a multi-functional control for immunohistochemistry : Standardization Of Ki67 (MIB1) assessment in routinely processed urinary bladder carcinoma tissue. Journal of Pathology , 190 , 503–11.

Ranefall, P., Bidar, A. W., and Hockings, P. D. (2009) Automatic segmentation of intra-abdominal and subcutaneous adipose tissue in 3D whole mouse MRI. J Magn Reson Imaging , 30 , 554–60.

Petter Ranefall NBIS affiliate

image analysis

email	petter.ranefall@it.uu.se
	https://orcid.org/0000-0002-6699-4015

Docent, Senior researcher/Resource person. Bioinformatician with focus on research support on image analysis.

Selected publications

Ranefall, P., Wester, K., Andersson, A.-C., Busch, C., and Bengtsson, E. (1998) Automatic quantification of immunohistochemically stained cell nuclei based on standard reference cells. Analytical Cellular Pathology , 17 , 111–23.

Ranefall, P., Wester, K., Busch, C., Malmstrom, P.-U., and Bengtsson, E. (1998) Automatic quantification of microvessels using unsupervised image analysis. Anal. Cell. Pathol. , 16 , 29–.

Ranefall, P., Egevad, L., Nordin, B., Busch, C., and Bengtsson, E. (1997) A new method for segmentation of colour images applied on immunohistochemically stained cells. Anal Cell Pathol , 15 , 145–.

Wester, K., Andersson, A. C., Ranefall, P., Bengtsson, E., Malmstrom, P. U., and Busch, C. (2000) Cultured human fibroblasts in agarose gel as a multi-functional controlfor immunohistochemistry. Standardization Of Ki67 (MIB1) assessment inroutinely processed urinary bladder carcinoma tissue. J Pathol , 190 , 503–.

Wester, K., Wahlund, E., Sundstrom, C., Ranefall, P., Bengtsson, E., Russell, P. J., Ow, K. T., Malmstrom, P. U., and Busch, C. (2000) Paraffin section storage and immunohistochemistry. Effects of time,temperature, fixation, and retrieval protocol with emphasis on p53 proteinand MIB1 antigen. Appl. Immunohistochem. , 8 , 61–.

Wester, K., Ranefall, P., Bengtsson, E., Busch, C., and Malmstrom, P. U. (1999) Automatic quantification of microvessel density in urinary bladdercarcinoma. Br J Cancer , 81 , 1363–.

Wester, K., Wahlund, E., Sundstrom, C., Ranefall, P., Bengtsson, E., Russell, P. J., Ow, K. T., Malmstrom, P. U., and Busch, C. (2000) Paraffin section storage and immunohistochemistry - Effects of time, temperature, fixation, and retrieval protocol with emphasis on p53 protein and MIB1 antigen. APPLIED IMMUNOHISTOCHEMISTRY & MOLECULAR MORPHOLOGY, 8 , 61–70.

Wester, K., Andersson, A. C., Ranefall, F., Bengtsson, E., Malmstrom, P. U., and Busch, C. (2000) Cultured human fibroblasts in agarose gel as a multi-functional control for immunohistochemistry. Standardization of Ki67 (MIBI) assessment in routinely processed urinary bladder carcinoma tissue. JOURNAL OF PATHOLOGY , 190 , 503–511.

Ranefall, P., Pacureanu, A., and Wählby, C. (2013) Viewing and analyzing slide scanner data using CellProfiler (work in progress). In, European BioImage Analysis Symposium 2013 :. Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA, USA, p. 58–.

Ranefall, P., Nordin, B., and Bengtsson, E. (1995) Finding Facial Features Using an HLS Colour Space. In, 8th International Conference on Image Analysis and Processing. Springer Verlag, pp. 191–196.

Ranefall, P. and Bengtsson, E. (1997) Automatic quantification of immunohistochemically stained cell nuclei using unsupervised image analysis. 58.

Thurfjell, L., Ranefall, P., and Bengtsson, E. (1998) A Deformable Atlas of the Chest Based on the Visible Man. Machine Graphics and Vision , 7 , 176–186.

Ranefall, P., Nordin, B., and Bengtsson, E. (1997) A New Method for Creating a Pixelwise Box classifier for Colour Images. Machine Graphics and Vision , 6 , 305–323.

Hellström, M., Ranefall, P., Wester, K., Brändstedt, S., and Busch, C. (1997) Effect of androgen deprivation on epithelial and mesenchymal tissue components in localized prostate cancer. British Journal of Urology , 79 , 421–426.

Ranefall, P., Egevad, L., Nordin, B., and Bengtsson, E. (1997) A new method for segmentation of colour images applied to immunohistochemically stained cell nuclei. Analytical Cellular Pathology , 15 , 145–156.

Ranefall, P., Wester, K., and Bengtsson, E. (1998) Automatic quantification of immunohistochemically stained cell nuclei using unsupervised image analysis. Analytical Cellular Pathology , 16 , 29–43.

Ranefall, P., Wester, K., Busch, C., Malmström, P.-U., and Bengtsson, E. (1998) Automatic quantification of microvessels using unsupervised image analysis. Analytical Cellular Pathology , 17 , 83–92.

Wester, K., Ranefall, P., Bengtsson, E., Busch, C., and Malmström, P.-U. (1999) Automatic quantification of microvessel density in urinary bladder carcinoma. British Journal of Cancer , 81 , 1363–1370.

Ranefall, P. (1998) Towards automatic quantification of immunohistochemistry using colour image analysis. 40.

Wester, K., Andersson, A.-C., Ranefall, P., Bengtsson, E., Malmström, P.-U., and Busch, C. (2000) Cultured human fibroblasts in agarose gel as a multi-functional control for immunohistochemistry : Standardization Of Ki67 (MIB1) assessment in routinely processed urinary bladder carcinoma tissue. Journal of Pathology , 190 , 503–11.

Ranefall, P., Bidar, A. W., and Hockings, P. D. (2009) Automatic segmentation of intra-abdominal and subcutaneous adipose tissue in 3D whole mouse MRI. J Magn Reson Imaging , 30 , 554–60.